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LOC4332153 squalene monooxygenase SE1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332153, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332153
Gene description
squalene monooxygenase SE1
Locus tag
OSNPB_030231800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332153 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (7006115..7011368, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6957669..6962622, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX19-like Neighboring gene branched-chain-amino-acid aminotransferase 5, chloroplastic Neighboring gene squalene monooxygenase SE1 Neighboring gene protein SHORT HYPOCOTYL IN WHITE LIGHT 1 Neighboring gene transcription factor bHLH74

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables squalene monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene monooxygenase SE1
Names
Os03g0231800

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    7006115..7011368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775217.3 → XP_015630703.1  squalene monooxygenase SE1

    UniProtKB/TrEMBL
    Q10PK2
    Conserved Domains (4) summary
    PLN02985
    Location:155 → 618
    PLN02985; squalene monooxygenase
    pfam08491
    Location:308 → 581
    SE; Squalene epoxidase
    pfam13450
    Location:162 → 189
    NAD_binding_8; NAD(P)-binding Rossmann-like domain
    cl00213
    Location:208 → 284
    DNA_BRE_C; DNA breaking-rejoining enzymes, C-terminal catalytic domain
Nucleotide Protein
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