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LOC4332151 branched-chain-amino-acid aminotransferase 5, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332151, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4332151
Gene description
branched-chain-amino-acid aminotransferase 5, chloroplastic
Locus tag
OSNPB_030231600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332151 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6996481..6999179)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6948000..6950926)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene inositol-tetrakisphosphate 1-kinase 2-like Neighboring gene homeobox-leucine zipper protein HOX19-like Neighboring gene squalene monooxygenase SE1 Neighboring gene squalene monooxygenase SE1 Neighboring gene protein SHORT HYPOCOTYL IN WHITE LIGHT 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables branched-chain-amino-acid transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in branched-chain amino acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
branched-chain-amino-acid aminotransferase 2, chloroplastic; branched-chain-amino-acid aminotransferase 5, chloroplastic
Names
Os03g0231600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    6996481..6999179
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066308261.1 → XP_066164358.1  branched-chain-amino-acid aminotransferase 5, chloroplastic isoform X2

    UniProtKB/TrEMBL
    Q10PK8

  2. XM_015775222.2 → XP_015630708.1  branched-chain-amino-acid aminotransferase 2, chloroplastic isoform X1

    UniProtKB/TrEMBL
    A2XE78, Q0DTR3, Q10PL0, Q8GRH8
    Conserved Domains (1) summary
    PLN02782
    Location:68 → 412
    PLN02782; Branched-chain amino acid aminotransferase
Nucleotide Protein
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