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LOC4332119 conserved oligomeric Golgi complex subunit 6 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332119, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4332119
Gene description
conserved oligomeric Golgi complex subunit 6
Locus tag
OSNPB_030225600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4332119 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (6629253..6635930)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6581175..6587864)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene protein RGF1 INDUCIBLE TRANSCRIPTION FACTOR 1 Neighboring gene nuclear pore complex protein NUP133 Neighboring gene uncharacterized LOC136355768 Neighboring gene wall-associated receptor kinase-like 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 6
Names
Os03g0225600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    6629253..6635930
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777193.3 → XP_015632679.1  conserved oligomeric Golgi complex subunit 6

    UniProtKB/TrEMBL
    B9F6B2, Q8H7R7
    Conserved Domains (1) summary
    pfam06419
    Location:29 → 683
    COG6; Conserved oligomeric complex COG6
Nucleotide Protein
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