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LOC4331792 adenylosuccinate synthetase 1, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331792, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4331792
Gene description
adenylosuccinate synthetase 1, chloroplastic-like
Locus tag
OSNPB_030174500
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
PURA1; OsJ_09613
Expression
Ubiquitous expression in flower buds (RPKM 54.1), flowers (RPKM 43.6) and 6 other tissues See more
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Genomic context

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See LOC4331792 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3997732..4000997, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3986797..3990003, complement)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene probable glucuronoxylan glucuronosyltransferase F8H Neighboring gene dehydration-responsive element-binding protein 2E Neighboring gene tRNA-specific 2-thiouridylase MnmA Neighboring gene uncharacterized LOC112938277

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables adenylosuccinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 'de novo' AMP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in IMP metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
adenylosuccinate synthetase 1, chloroplastic
Names
AMPSase 1
AdSS 1
IMP--aspartate ligase 1
LOC_Os03g07840
NP_001404168.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001417239.1 → NP_001404168.1  adenylosuccinate synthetase 1, chloroplastic

    Status: VALIDATED

    Source sequence(s)
    AK066881, AP014959, AU166462, CI136270, CI656396
    UniProtKB/Swiss-Prot
    A2XD35, A3AEN4, Q10R17
    UniProtKB/TrEMBL
    V5K4U2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    3997732..4000997 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10R17.1 GenPept UniProtKB/Swiss-Prot:Q10R17

Gene LinkOut

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Molecular Biology Databases
Research Materials