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HSFA2D Heat stress transcription factor A-2d [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331707, updated on 17-Jul-2024

Summary

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Gene symbol
HSFA2D
Gene description
Heat stress transcription factor A-2d
Locus tag
OSNPB_030161800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ARD; ARD2; HSF7; HSF08; SIP2A; rHsf7; ARD' 2; Ni-ARD 2; OsHsf-08; OsJ_09506; OsJ_009160; OJ1607A12.12; OJ1607A12.13
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Genomic context

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See HSFA2D in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (3351794..3354045)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (3338232..3344523)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene EPIDERMAL PATTERNING FACTOR-like protein 5 Neighboring gene 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 Neighboring gene uncharacterized LOC107280444 Neighboring gene indole-3-pyruvate monooxygenase YUCCA8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification and characterization of a novel water-deficit-suppressed gene OsARD encoding an aci-reductone-dioxygenase-like protein in rice. Lin T, et al. Gene, 2005 Oct 24. PMID 16169685
  2. OsHSF7 gene in rice, Oryza sativa L., encodes a transcription factor that functions as a high temperature receptive and responsive factor. Liu JG, et al. BMB Rep, 2009 Jan 31. PMID 19192388
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  5. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cellular response to heat IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2
Names
ARD 2
Fe-ARD 2
Heat stress transcription factor 7
Heat stress transcription factor 8
LOC_Os03g06620
LOC_Os03g06630
Submergence-induced protein 2A
acireductone dioxygenase (Fe(2+)-requiring) 2
acireductone dioxygenase (Ni(2+)-requiring) 2
NP_001388980.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402051.1 → NP_001388980.1  1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2

    Status: VALIDATED

    Source sequence(s)
    AY344489, CB660873, CB678246

RNA

  1. NR_174989.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    CB660873, CB678246

  2. NR_174990.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AY344489, CB660873, CB678246

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    3351794..3354045
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q10RE5.1 GenPept UniProtKB/Swiss-Prot:Q10RE5
Q8H7Y6.2 GenPept UniProtKB/Swiss-Prot:Q8H7Y6

Gene LinkOut

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