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CPK7 calcium-dependent protein kinase 7-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331490, updated on 18-Sep-2024

Summary

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Gene symbol
CPK7
Gene description
calcium-dependent protein kinase 7-like
Locus tag
OSNPB_030128700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
CDPK1; CPK11; CDPK12; OsCPK7; OSCPKII; OsCDPK7; OJ1528D07.2
Expression
Ubiquitous expression in mature seeds (RPKM 50.7), flowers (RPKM 34.2) and 6 other tissues See more
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Genomic context

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See CPK7 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (1632933..1637363)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (1624884..1629492)

Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331488 Neighboring gene DNA polymerase delta small subunit-like Neighboring gene uncharacterized LOC4331491 Neighboring gene monosaccharide-sensing protein 2 Neighboring gene PIGF/3-ketodihydrosphingosine reductase fusion protein Neighboring gene MLO protein homolog 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice. He SL, et al. Sci Rep, 2018 Jan 10. PMID 29321675, Free PMC Article
  2. Molecular cloning of two novel rice cDNA sequences encoding putative calcium-dependent protein kinases. Breviario D, et al. Plant Mol Biol, 1995 Mar. PMID 7766885
  3. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Data reveal that OsCDPK1 acts as a positive regulator of OsPR10a, indicating that OsCDPK1 is an upstream component of the defense signaling pathway.
    Title: Overexpression of a constitutively active truncated form of OsCDPK1 confers disease resistance by affecting OsPR10a expression in rice.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium/calmodulin-dependent protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calmodulin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autophosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calcium-dependent protein kinase 7
Names
CDPK 11
LOC_Os03g03660
calcium dependent protein kinase
calcium-dependent protein kinase OsCDPK1
calcium-dependent protein kinase OsCDPK13
NP_001388959.1
NP_001388960.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402030.1 → NP_001388959.1  calcium-dependent protein kinase 7

    Status: VALIDATED

    Source sequence(s)
    AF048691, AK066500, AU057853
    UniProtKB/Swiss-Prot
    A0A0P0VSL0, O65003, P53684, Q10SB0, Q8GV21, Q8H889, Q8H9A7, Q9SNK9
    UniProtKB/TrEMBL
    B8AMD2

  2. NM_001402031.1 → NP_001388960.1  calcium-dependent protein kinase 7

    Status: VALIDATED

    Source sequence(s)
    AU057853, CB671903, CI594593, X81393
    UniProtKB/Swiss-Prot
    A0A0P0VSL0, O65003, P53684, Q10SB0, Q8GV21, Q8H889, Q8H9A7, Q9SNK9
    UniProtKB/TrEMBL
    B8AMD2

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

    Range
    1632933..1637363
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P53684.2 GenPept UniProtKB/Swiss-Prot:P53684

Gene LinkOut

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Research Materials