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LOC4331247 uncharacterized LOC4331247 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331247, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4331247
Gene description
uncharacterized LOC4331247
Locus tag
OSNPB_020830801
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1149_C12.3
Expression
Ubiquitous expression in flowers (RPKM 10.3), flower buds (RPKM 8.2) and 6 other tissues See more
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Genomic context

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See LOC4331247 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (36216642..36229309)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (35717764..35730500)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene two-component response regulator ORR3 Neighboring gene uncharacterized LOC107276946 Neighboring gene inactive leucine-rich repeat receptor-like serine/threonine-protein kinase At1g60630 Neighboring gene serine/threonine-protein phosphatase 7 long form homolog Neighboring gene uncharacterized LOC107280076

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cell morphogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell cortex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in site of polarized growth IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4331247
Names
Os02g0830801
Os02g0830900
protein furry

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    36216642..36229309
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770237.3 → XP_015625723.1  uncharacterized protein LOC4331247 isoform X1

    UniProtKB/TrEMBL
    A2XBB1, A3AD04
    Conserved Domains (3) summary
    pfam14228
    Location:622 → 1734
    MOR2-PAG1_mid; Cell morphogenesis central region
    pfam14222
    Location:85 → 585
    MOR2-PAG1_N; Cell morphogenesis N-terminal
    pfam14225
    Location:1759 → 2047
    MOR2-PAG1_C; Cell morphogenesis C-terminal

  2. XM_066307291.1 → XP_066163388.1  uncharacterized protein LOC4331247 isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials