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LOC4331034 uncharacterized LOC4331034 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4331034, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4331034
Gene description
uncharacterized LOC4331034
Locus tag
OSNPB_020800000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in leaves before flowering (RPKM 140.6), leaves after flowering (RPKM 94.9) and 6 other tissues See more
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Genomic context

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See LOC4331034 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (34567286..34571760)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (34071033..34075513)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4331033 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 2-like Neighboring gene cyclin-B1-2-like Neighboring gene uncharacterized protein Os02g0798501-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4331034
Names
OSJNBa0032L17.6
Os02g0800000
P-loop guanosine triphosphatase YjiA
PRLI-interacting factor L-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    34567286..34571760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771090.3 → XP_015626576.1  uncharacterized protein LOC4331034

    UniProtKB/TrEMBL
    A0A0P0VQU7, B8AED8, Q69IK7
    Conserved Domains (1) summary
    COG0523
    Location:90 → 445
    YejR; GTPase, G3E family [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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