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LOC4330878 uncharacterized LOC4330878 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330878, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330878
Gene description
uncharacterized LOC4330878
Locus tag
OSNPB_020772300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1611_C08.13
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Genomic context

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See LOC4330878 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (33092783..33095704)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32597416..32600379)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330875 Neighboring gene putative transcription elongation factor SPT5 homolog 1 Neighboring gene uncharacterized LOC107277523 Neighboring gene uncharacterized LOC4330879 Neighboring gene uncharacterized LOC9267910

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H2A acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H4 acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptide-serine-alpha-N-acetyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4330878
Names
GCN5-related N-acetyltransferase protein-like
Os02g0772300

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    33092783..33095704
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768395.3 → XP_015623881.1  uncharacterized protein LOC4330878

    UniProtKB/TrEMBL
    B9FPD7
    Conserved Domains (2) summary
    pfam00583
    Location:147 → 224
    Acetyltransf_1; Acetyltransferase (GNAT) family
    cl27023
    Location:32 → 58
    TraY; TraY domain

RNA

  1. XR_001542961.3 RNA Sequence

  2. XR_001542962.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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Research Materials