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LOC4330841 THO complex subunit 5A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330841, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330841
Gene description
THO complex subunit 5A
Locus tag
OSNPB_020767100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1004_A11.24
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Genomic context

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See LOC4330841 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32790681..32795925)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32295291..32300576)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative mannan endo-1,4-beta-mannosidase 9 Neighboring gene uncharacterized LOC4330840 Neighboring gene triacylglycerol lipase OBL1 Neighboring gene flavonol synthase/flavanone 3-hydroxylase Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA export from nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription, elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of THO complex part of transcription export complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THO complex subunit 5A
Names
Os02g0767100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    32790681..32795925
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771310.3 → XP_015626796.1  THO complex subunit 5A

    UniProtKB/TrEMBL
    B9F3F0
    Conserved Domains (1) summary
    pfam09766
    Location:84 → 433
    FimP; Fms-interacting protein
Nucleotide Protein
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