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LOC4330807 uncharacterized LOC4330807 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330807, updated on 16-Jul-2024

Summary

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Gene symbol
LOC4330807
Gene description
uncharacterized LOC4330807
Locus tag
OSNPB_020761200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0486G03.3; OJ1175_B01.27
Expression
Ubiquitous expression in flower buds (RPKM 10.7), flowers (RPKM 6.7) and 6 other tissues See more
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Genomic context

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See LOC4330807 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (32547898..32551229, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (32052566..32055918, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene MADS-box transcription factor 22-like Neighboring gene peptidyl-prolyl cis-trans isomerase CYP40 Neighboring gene uncharacterized LOC9271812 Neighboring gene presequence protease 1, chloroplastic/mitochondrial

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4330807
Names
Os02g0761200
armadillo repeat-containing protein 6
armadillo/beta-catenin repeat protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    32547898..32551229 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769423.3 → XP_015624909.1  uncharacterized protein LOC4330807

    UniProtKB/TrEMBL
    A2X9V6, A3ABL3, Q6Z6H7
    Conserved Domains (1) summary
    sd00043
    Location:293 → 328
    ARM; armadillo repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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