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LOC4330709 soluble starch synthase 2-2, chloroplastic/amyloplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330709, updated on 18-Sep-2024

Summary

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Gene symbol
LOC4330709
Gene description
soluble starch synthase 2-2, chloroplastic/amyloplastic-like
Locus tag
OSNPB_020744700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SS2; SSII-2; OJ1118_G04.8; OJ1734_E02.35
Expression
Broad expression in leaves before flowering (RPKM 26.2), roots after flowering (RPKM 17.4) and 6 other tissues See more
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Genomic context

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See LOC4330709 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31728372..31733378, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31233268..31238222, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280066 Neighboring gene probable glucomannan 4-beta-mannosyltransferase 6 Neighboring gene geranylgeranyl diphosphate reductase, chloroplastic-like Neighboring gene protein RKD1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
soluble starch synthase 2-2, chloroplastic/amyloplastic
Names
LOC_Os02g51070
putative soluble starch synthase 2
soluble starch synthase II-2
starch synthase
NP_001403821.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416892.1 → NP_001403821.1  soluble starch synthase 2-2, chloroplastic/amyloplastic

    Status: VALIDATED

    Source sequence(s)
    AK061803, AK066446, CI105572, CI129769, CI387765, CI569815, CI686240
    UniProtKB/Swiss-Prot
    Q6Z2T8, Q949A6, Q94ET4
    UniProtKB/TrEMBL
    B8AIG0, D0TZP8

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31728372..31733378 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6Z2T8.2 GenPept UniProtKB/Swiss-Prot:Q6Z2T8

Gene LinkOut

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Molecular Biology Databases
Research Materials