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LOC4330705 uncharacterized LOC4330705 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330705, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330705
Gene description
uncharacterized LOC4330705
Locus tag
OSNPB_020744100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
ArsM3; OJ1734_E02.27
Expression
Ubiquitous expression in leaves before flowering (RPKM 17.4), roots before flowering (RPKM 11.6) and 6 other tissues See more
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Genomic context

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See LOC4330705 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31705330..31707921)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (31210169..31212753)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene casparian strip membrane protein 4 Neighboring gene photosynthetic NDH subunit of subcomplex B 4, chloroplastic Neighboring gene expansin-A5-like Neighboring gene uncharacterized LOC107280066

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables S-adenosylmethionine-dependent methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4330705
Names
As(III) methyltransferase
Os02g0744100
UbiE/COQ5 methyltransferase-like
methyltransferase-like protein 7A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31705330..31707921
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768231.3 → XP_015623717.1  uncharacterized protein LOC4330705

    UniProtKB/TrEMBL
    A0A0P0VPC0, B8AIF8, Q0DXM4, Q6Z2U2
    Conserved Domains (1) summary
    pfam08241
    Location:123 → 222
    Methyltransf_11; Methyltransferase domain
Nucleotide Protein
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