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LOC4330633 mediator of RNA polymerase II transcription subunit 23 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330633, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330633
Gene description
mediator of RNA polymerase II transcription subunit 23
Locus tag
OSNPB_020732700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4330633 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
21
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (31037066..31048428, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30542192..30553586, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ADP-ribosylation factor-like protein 8c Neighboring gene MYB-like transcription factor ODO1 Neighboring gene GDSL esterase/lipase At5g37690 Neighboring gene APO protein 2, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in positive regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mediator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of transcription regulator complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mediator of RNA polymerase II transcription subunit 23
Names
Os02g0732700
P0643A10.26

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    31037066..31048428 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769629.3 → XP_015625115.1  mediator of RNA polymerase II transcription subunit 23 isoform X2

    UniProtKB/TrEMBL
    B8AI23
    Conserved Domains (1) summary
    pfam11573
    Location:761 → 1528
    Med23; Mediator complex subunit 23

  2. XM_015769628.3 → XP_015625114.1  mediator of RNA polymerase II transcription subunit 23 isoform X1

    UniProtKB/TrEMBL
    B8AI23, B9F2K2, Q6Z2J8
    Conserved Domains (1) summary
    pfam11573
    Location:745 → 1337
    Med23; Mediator complex subunit 23
Nucleotide Protein
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