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LOC4330616 rRNA-processing protein fcf2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330616, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330616
Gene description
rRNA-processing protein fcf2
Locus tag
OSNPB_020730500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 19.6), leaves before flowering (RPKM 13.7) and 6 other tissues See more
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Genomic context

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See LOC4330616 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30926470..30928293, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (30432176..30434101, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene potassium transporter 25-like Neighboring gene uncharacterized LOC4330615 Neighboring gene aluminum-activated malate transporter 9 Neighboring gene aspartyl protease APCB1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rRNA-processing protein fcf2
Names
Acidic 82 kDa protein -like
OSJNBa0072H09.39
Os02g0730500
P0617A09.18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    30926470..30928293 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770136.3 → XP_015625622.1  rRNA-processing protein fcf2

    UniProtKB/TrEMBL
    A0A0N7KG14, A2X988, Q0DXW0, Q6YWQ2
    Conserved Domains (1) summary
    pfam08698
    Location:69 → 163
    Fcf2; Fcf2 pre-rRNA processing
Nucleotide Protein
Heading Accession and Version

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