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LOC4330529 clustered mitochondria protein [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330529, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330529
Gene description
clustered mitochondria protein
Locus tag
OSNPB_020717400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1191_G08.42; OJ2056_H01.14
Expression
Ubiquitous expression in roots before flowering (RPKM 37.4), flower buds (RPKM 37.3) and 6 other tissues See more
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Genomic context

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See LOC4330529 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (30255298..30266680, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29763616..29775047, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4330527 Neighboring gene outer envelope pore protein 16-3, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC4330530 Neighboring gene uncharacterized LOC4330531

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in organelle organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
clustered mitochondria protein
Names
Os02g0717400
eukaryotic translation initiation factor 3 subunit (eIF-3)-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    30255298..30266680 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770316.3 → XP_015625802.1  clustered mitochondria protein isoform X2

    UniProtKB/TrEMBL
    A0A0P0VNZ1, B8AHM3, Q6ZGV8
    Conserved Domains (6) summary
    sd00006
    Location:1060 → 1095
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1142 → 1216
    TPR_12; Tetratricopeptide repeat
    pfam05303
    Location:265 → 334
    DUF727; Protein of unknown function (DUF727)
    pfam12807
    Location:808 → 990
    eIF3_p135; Translation initiation factor eIF3 subunit 135
    pfam13236
    Location:386 → 665
    CLU; Clustered mitochondria
    pfam15044
    Location:102 → 177
    CLU_N; Mitochondrial function, CLU-N-term

  2. XM_026022859.2 → XP_025878644.1  clustered mitochondria protein isoform X1

    UniProtKB/TrEMBL
    B8AHM3
    Conserved Domains (5) summary
    sd00006
    Location:1084 → 1119
    TPR; TPR repeat [structural motif]
    pfam12807
    Location:832 → 1014
    eIF3_p135; Translation initiation factor eIF3 subunit 135
    pfam13236
    Location:386 → 689
    CLU; Clustered mitochondria
    pfam13424
    Location:1166 → 1240
    TPR_12; Tetratricopeptide repeat
    pfam15044
    Location:100 → 177
    CLU_N; Mitochondrial function, CLU-N-term

  3. XM_015770315.2 → XP_015625801.1  clustered mitochondria protein isoform X1

    UniProtKB/TrEMBL
    B8AHM3
    Conserved Domains (5) summary
    sd00006
    Location:1084 → 1119
    TPR; TPR repeat [structural motif]
    pfam12807
    Location:832 → 1014
    eIF3_p135; Translation initiation factor eIF3 subunit 135
    pfam13236
    Location:386 → 689
    CLU; Clustered mitochondria
    pfam13424
    Location:1166 → 1240
    TPR_12; Tetratricopeptide repeat
    pfam15044
    Location:100 → 177
    CLU_N; Mitochondrial function, CLU-N-term
Nucleotide Protein
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