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LOC4330404 lysine-specific demethylase JMJ706-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330404, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4330404
Gene description
lysine-specific demethylase JMJ706-like
Locus tag
OSNPB_020696700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0666E12.1
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Genomic context

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See LOC4330404 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (29128213..29135360)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (28638404..28645796)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene probable xyloglucan endotransglucosylase/hydrolase protein 30 Neighboring gene uncharacterized LOC4330403 Neighboring gene probable transcription factor KAN2 Neighboring gene uncharacterized LOC4330405

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

  • PZA00652_Zea_mays_ssp._parviglumis_Beadle_&_Kato_site_4 (e-PCR)

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone H3K4me/H3K4me2/H3K4me3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase JMJ706-like
Names
B1053A04.29
Os02g0696700
retinoblastoma binding protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    29128213..29135360
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771121.3 → XP_015626607.1  lysine-specific demethylase JMJ706-like isoform X1

    UniProtKB/TrEMBL
    B8AHB4
    Conserved Domains (3) summary
    pfam02373
    Location:235 → 358
    JmjC; JmjC domain, hydroxylase
    pfam02375
    Location:59 → 91
    JmjN; jmjN domain
    pfam02928
    Location:458 → 510
    zf-C5HC2; C5HC2 zinc finger

  2. XM_015771122.3 → XP_015626608.1  lysine-specific demethylase JMJ706-like isoform X1

    UniProtKB/TrEMBL
    B8AHB4
    Conserved Domains (3) summary
    pfam02373
    Location:235 → 358
    JmjC; JmjC domain, hydroxylase
    pfam02375
    Location:59 → 91
    JmjN; jmjN domain
    pfam02928
    Location:458 → 510
    zf-C5HC2; C5HC2 zinc finger

  3. XM_066307713.1 → XP_066163810.1  lysine-specific demethylase JMJ706-like isoform X2

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials