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LOC4330285 uncharacterized LOC4330285 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330285, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4330285
Gene description
uncharacterized LOC4330285
Locus tag
OSNPB_020672700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1197_E09.8; OJ1493_H11.21
Expression
Ubiquitous expression in leaves before flowering (RPKM 31.4), mature seeds (RPKM 24.8) and 6 other tissues See more
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Genomic context

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See LOC4330285 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27855673..27858293)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27369104..27371869)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene mitochondrial import inner membrane translocase subunit TIM23-1 Neighboring gene mRNA m(6)A methyltransferase Neighboring gene probable serine/threonine-protein kinase WNK4 Neighboring gene aluminum-activated malate transporter 10-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA polymerase III activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in termination of RNA polymerase III transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase III complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4330285
Names
DNA-directed RNA polymerase III subunit RPC10
Os02g0672700
putative DNA-directed RNA polymerase II
putative DNA-directed RNA polymerase III

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    27855673..27858293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769956.3 → XP_015625442.1  uncharacterized protein LOC4330285

    UniProtKB/TrEMBL
    A2X876, B9F1L5, Q6EU09, Q6EU50
    Conserved Domains (1) summary
    COG1594
    Location:1 → 110
    RPB9; DNA-directed RNA polymerase, subunit M/Transcription elongation factor TFIIS [Transcription]
Nucleotide Protein
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