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LOC4330235 probable phospholipid hydroperoxide glutathione peroxidase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330235, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4330235
Gene description
probable phospholipid hydroperoxide glutathione peroxidase
Locus tag
OSNPB_020664000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0461B08.1
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Genomic context

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See LOC4330235 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (27416146..27418771)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26929720..26932345)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene actin-depolymerizing factor 1-like Neighboring gene pentatricopeptide repeat-containing protein At5g39350 Neighboring gene FT-interacting protein 1 Neighboring gene UDP-glucose:glycoprotein glucosyltransferase Neighboring gene tripeptidyl-peptidase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutathione peroxidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in response to oxidative stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable phospholipid hydroperoxide glutathione peroxidase
Names
Os02g0664000
putative glutathione peroxidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    27416146..27418771
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767260.2 → XP_015622746.1  probable phospholipid hydroperoxide glutathione peroxidase

    UniProtKB/TrEMBL
    A2X822, B9F1I4, Q6ESJ0
    Conserved Domains (1) summary
    cl00388
    Location:80 → 238
    Thioredoxin_like; Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold
Nucleotide Protein
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