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LOC4330184 probable enoyl-CoA hydratase 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330184, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4330184
Gene description
probable enoyl-CoA hydratase 2, mitochondrial
Locus tag
OSNPB_020654100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1003_B06.2
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Genomic context

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See LOC4330184 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (26872858..26875891)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26386491..26389542)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1-Ibeta2, chloroplastic Neighboring gene probable enoyl-CoA hydratase 2, mitochondrial Neighboring gene uncharacterized LOC136355123 Neighboring gene serine/threonine-protein kinase D6PK Neighboring gene transcription initiation factor TFIID subunit 4b Neighboring gene ubiquitin carboxyl-terminal hydrolase 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables catalytic activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid beta-oxidation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable enoyl-CoA hydratase 2, mitochondrial
Names
Os02g0654100
putative enoyl-CoA hydratase
putative enoyl-CoA hydratase/isomerase YngF

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    26872858..26875891
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307341.1 → XP_066163438.1  probable enoyl-CoA hydratase 2, mitochondrial isoform X1

  2. XM_015767746.3 → XP_015623232.1  probable enoyl-CoA hydratase 2, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A0N7KFT1, B8AG29, B9F1F2, Q6H7I3
    Conserved Domains (1) summary
    PLN02600
    Location:50 → 300
    PLN02600; enoyl-CoA hydratase
Nucleotide Protein
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