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LOC4330077 bifunctional nitrilase/nitrile hydratase NIT4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330077, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4330077
Gene description
bifunctional nitrilase/nitrile hydratase NIT4-like
Locus tag
OSNPB_020635200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NIT4; OsNIT4; OsJ_007404; OJ1626_B09.8
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Genomic context

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See LOC4330077 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25952060..25955848)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (25465688..25469542)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene proteasome subunit alpha type-2 Neighboring gene bifunctional nitrilase/nitrile hydratase NIT4-like Neighboring gene uncharacterized LOC112937834 Neighboring gene uncharacterized LOC136355465

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nitrilase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nitrile hydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in detoxification of nitrogen compound IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional nitrilase/nitrile hydratase NIT4
Names
Cyanoalanine nitrilase
LOC_Os02g42350
Nitrilase 4
putative nitrilase 2
NP_001388837.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401908.1 → NP_001388837.1  bifunctional nitrilase/nitrile hydratase NIT4

    Status: VALIDATED

    Source sequence(s)
    AK121244, CI069337, CI699514, CI746398
    UniProtKB/Swiss-Prot
    A3A9D2, B7EVI5, Q6H849, Q9SXX6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    25952060..25955848
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6H849.1 GenPept UniProtKB/Swiss-Prot:Q6H849

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials