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LOC4330016 succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330016, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4330016
Gene description
succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like
Locus tag
OSNPB_020621700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SCS-beta; OsJ_07569; OJ1234_B11.18
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Genomic context

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See LOC4330016 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (25224473..25230434)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (24741754..24747768)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase PRT1 Neighboring gene pistil-specific extensin-like protein Neighboring gene long-chain-alcohol oxidase FAO2 Neighboring gene casein kinase 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables succinate-CoA ligase (ADP-forming) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in succinyl-CoA metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of succinate-CoA ligase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial
Names
LOC_Os02g40830
Succinyl-CoA synthetase beta chain
putative succinyl-CoA ligase (GDP-forming) beta-chain, mitochondrial
succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial
succinyl-CoA ligase beta-chain
NP_001388834.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401905.1 → NP_001388834.1  succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AK101006, AU174658, CB658386, CI303203, CI340131
    UniProtKB/Swiss-Prot
    Q0DZG1, Q6K9N6
    UniProtKB/TrEMBL
    A2X7C5, S4TZU3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    25224473..25230434
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6K9N6.1 GenPept UniProtKB/Swiss-Prot:Q6K9N6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials