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LOC4329876 uncharacterized LOC4329876 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329876, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329876
Gene description
uncharacterized LOC4329876
Locus tag
OSNPB_020598400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1212_D02.17; OJ1212_D02.18
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Genomic context

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See LOC4329876 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23755034..23762180)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23272513..23279714)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene B3 domain-containing protein Os02g0598200-like Neighboring gene trans-Golgi network-localized SYP41-interacting protein 1 Neighboring gene probable protein phosphatase 2C 16 Neighboring gene uncharacterized LOC4329878 Neighboring gene uncharacterized LOC9271042 Neighboring gene probable protein phosphatase 2C 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Hsp90 protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein stabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4329876
Names
OSJNBa0038P01.1
OSJNBa0038P01.2
Os02g0598400
telomere length regulation protein TEL2 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23755034..23762180
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769688.3 → XP_015625174.1  uncharacterized protein LOC4329876 isoform X2

    UniProtKB/TrEMBL
    B8AF08
    Conserved Domains (1) summary
    pfam10193
    Location:633 → 743
    Telomere_reg-2; Telomere length regulation protein

  2. XM_015769687.3 → XP_015625173.1  uncharacterized protein LOC4329876 isoform X1

    UniProtKB/TrEMBL
    A0A0P0VLB2, Q6K1U9
Nucleotide Protein
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Gene LinkOut

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Molecular Biology Databases
Research Materials