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LOC4329844 inorganic phosphate transporter 2-1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329844, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329844
Gene description
inorganic phosphate transporter 2-1, chloroplastic
Locus tag
OSNPB_020593500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1067_B01.4-1; OJ1067_B01.4-2
Expression
Broad expression in leaves before flowering (RPKM 22.4), roots after flowering (RPKM 15.8) and 4 other tissues See more
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Genomic context

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See LOC4329844 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (23453896..23457638)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (22971870..22975179)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene FCS-Like Zinc finger 15 Neighboring gene amine oxidase [copper-containing] zeta, peroxisomal-like Neighboring gene uncharacterized LOC107275248 Neighboring gene plant intracellular Ras-group-related LRR protein 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphate transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphate ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inorganic phosphate transporter 2-1, chloroplastic
Names
OSJNBa0016G10.26-1
OSJNBa0016G10.26-2
Os02g0593500
putative phosphate transporter 2-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    23453896..23457638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771009.3 → XP_015626495.1  inorganic phosphate transporter 2-1, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0VLB6, A2X6P4, Q0DZX5, Q69L63, Q6ZH86, Q6ZH87
    Conserved Domains (1) summary
    pfam01384
    Location:158 → 557
    PHO4; Phosphate transporter family
Nucleotide Protein
Heading Accession and Version

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