U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4329701 probable nucleoside diphosphate kinase 5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329701, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4329701
Gene description
probable nucleoside diphosphate kinase 5
Locus tag
OSNPB_020565100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4329701 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21933407..21936012)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (21453099..21455790)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon CGC) Neighboring gene trihelix transcription factor ENAP1 Neighboring gene signal peptidase complex subunit 2 Neighboring gene pentatricopeptide repeat-containing protein At1g09900 Neighboring gene probable protein kinase At2g41970

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleoside diphosphate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in GTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in UTP biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
probable nucleoside diphosphate kinase 5
Names
Os02g0565100
P0020C11.23
putative outer arm dynein intermediate chain 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    21933407..21936012
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015768252.3 → XP_015623738.1  probable nucleoside diphosphate kinase 5

    UniProtKB/TrEMBL
    B8ADZ7, B9F0M1, Q6Z7E5
    Conserved Domains (1) summary
    PLN02931
    Location:26 → 181
    PLN02931; nucleoside diphosphate kinase family protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials