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LOC4329648 ultraviolet-B receptor UVR8 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329648, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4329648
Gene description
ultraviolet-B receptor UVR8
Locus tag
OSNPB_020554100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4329648 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (21392674..21397859)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (20913866..20919101)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene RNA polymerase II transcriptional coactivator KIWI Neighboring gene uncharacterized LOC4329647 Neighboring gene uncharacterized LOC4329649 Neighboring gene phosphoinositide phosphatase SAC7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ultraviolet-B receptor UVR8
Names
Os02g0554100
P0470G10.15
putative UVB-resistance protein (UVR8)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    21392674..21397859
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770636.3 → XP_015626122.1  ultraviolet-B receptor UVR8

    UniProtKB/TrEMBL
    A0A0P0VKA8, B8AJF0, Q69SU2
    Conserved Domains (1) summary
    COG5184
    Location:23 → 387
    ATS1; Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell cycle control, cell division, chromosome partitioning, Cytoskeleton]
Nucleotide Protein
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