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LOC4329556 alpha carbonic anhydrase 1, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329556, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4329556
Gene description
alpha carbonic anhydrase 1, chloroplastic
Locus tag
OSNPB_020533300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
B1136H02.2
Expression
Biased expression in roots before flowering (RPKM 44.8), leaves before flowering (RPKM 10.7) and 2 other tissues See more
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Genomic context

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See LOC4329556 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (20113810..20116748)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19635544..19638855)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 14 Neighboring gene uncharacterized protein At5g03900, chloroplastic Neighboring gene heme-binding-like protein At3g10130, chloroplastic Neighboring gene transfer RNA cysteine (anticodon GCA) Neighboring gene uncharacterized LOC4329558

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbonate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in one-carbon metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha carbonic anhydrase 1, chloroplastic
Names
Os02g0533300
P0605D08.35
putative nectarin III

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    20113810..20116748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015770730.3 → XP_015626216.1  alpha carbonic anhydrase 1, chloroplastic

    UniProtKB/TrEMBL
    A0A0P0VJV4, A2X5P2, Q6EPY7, Q6ESE2
    Conserved Domains (1) summary
    cd03124
    Location:37 → 263
    alpha_CA_prokaryotic_like; Carbonic anhydrase alpha, prokaryotic-like subfamily. Carbonic anhydrases (CAs) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism: a nucleophilic attack of a zinc-bound hydroxide ion on carbon ...
Nucleotide Protein
Heading Accession and Version

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