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LOC4329540 60S acidic ribosomal protein P2A [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329540, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4329540
Gene description
60S acidic ribosomal protein P2A
Locus tag
OSNPB_020529700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in flowers (RPKM 46.2), flower buds (RPKM 36.3) and 5 other tissues See more
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Genomic context

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See LOC4329540 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (19933021..19936249, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (19455152..19458401, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene SNAP25 homologous protein SNAP33 Neighboring gene probable glycosyltransferase 2 Neighboring gene ent-isokaurene C2/C3-hydroxylase-like Neighboring gene pentatricopeptide repeat-containing protein At4g13650

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translational elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
60S acidic ribosomal protein P2A
Names
Os02g0529700
P0476H10.25
putative 60S acidic ribosomal protein P2A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416636.1 → NP_001403565.1  60S acidic ribosomal protein P2A

    Status: VALIDATED

    Source sequence(s)
    CI552777, CI590977, CI657161
    UniProtKB/TrEMBL
    A2X5K7, A3A7K4, Q6H764

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    19933021..19936249 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066307013.1 → XP_066163110.1  60S acidic ribosomal protein P2A isoform X1

    UniProtKB/TrEMBL
    A2X5K7, A3A7K4, Q6H764
Nucleotide Protein
Heading Accession and Version

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