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LOC4329409 DNA repair protein RAD50 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329409, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4329409
Gene description
DNA repair protein RAD50
Locus tag
OSNPB_020497500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
rad50
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Genomic context

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See LOC4329409 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (17951012..17968864, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (17489929..17507814, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278776 Neighboring gene predicted GPI-anchored protein 23 Neighboring gene nuclear transport factor 2 Neighboring gene probable magnesium transporter NIPA2 Neighboring gene uncharacterized LOC4329414

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables G-quadruplex DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA duplex unwinding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chromosome organization involved in meiotic cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere maintenance via telomerase IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Mre11 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in condensed nuclear chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA repair protein RAD50
Names
DNA repair-recombination protein
Os02g0497500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    17951012..17968864 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771294.3 → XP_015626780.1  DNA repair protein RAD50

    UniProtKB/TrEMBL
    B8AIA2, Q0E131, Q7Y239
    Conserved Domains (1) summary
    TIGR00606
    Location:2 → 1309
    rad50

RNA

  1. XR_003241036.2 RNA Sequence

  2. XR_001543757.3 RNA Sequence

Nucleotide Protein
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Research Materials