U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4329192 GTPase activating protein 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329192, updated on 21-Jun-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4329192
Gene description
GTPase activating protein 1-like
Locus tag
OSNPB_020327000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GAP1; GPBP1; OsGAP1; OsGPBP1; OsJ_06508
Expression
Broad expression in roots before flowering (RPKM 613.1), leaves after flowering (RPKM 223.7) and 4 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4329192 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
3
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (13173635..13176226)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene ARF guanine-nucleotide exchange factor GNOM Neighboring gene RHOMBOID-like protein 9, chloroplastic Neighboring gene ADP-ribosylation factor-like protein 2 Neighboring gene uncharacterized LOC4329194

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice. Cheung MY, et al. Biochem J, 2020 Oct 30. PMID 32955089
  2. An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein. Cheung MY, et al. J Biol Chem, 2010 Nov 26. PMID 20876569, Free PMC Article
  3. Expression of a RING-HC protein from rice improves resistance to Pseudomonas syringae pv. tomato DC3000 in transgenic Arabidopsis thaliana. Cheung MY, et al. J Exp Bot, 2007. PMID 18182423
  4. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice.
    Title: A structure model explaining the binding between a ubiquitous unconventional G-protein (OsYchF1) and a plant-specific C2-domain protein (OsGAP1) from rice.
  2. GTPase/ATPase activities and RNA binding capacity of YchF(BAD03576) is regulated by GAP1(BAD15699).
    Title: An ancient P-loop GTPase in rice is regulated by a higher plant-specific regulatory protein.
Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
GTPase activating protein 1; gTPase activating protein 1
Names
C2 domain-containing protein-like
G-protein binding protein 1
LOC_Os02g22130
OSJNBb0042G06.10
P0476C12.36

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416584.1 → NP_001403513.1  gTPase activating protein 1

    Status: VALIDATED

    Source sequence(s)
    AK104165, AU182292, C28303, CI264416
    UniProtKB/Swiss-Prot
    A0A0N7KF73, A2X479, Q6YWF1

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    13173635..13176226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772115.2 → XP_015627601.1  GTPase activating protein 1

    UniProtKB/Swiss-Prot
    Q6YWF1
    Conserved Domains (1) summary
    cd04038
    Location:6 → 148
    C2_ArfGAP; C2 domain present in Arf GTPase Activating Proteins (GAP)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6YWF1.1 GenPept UniProtKB/Swiss-Prot:Q6YWF1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials