U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4329057 uncharacterized LOC4329057 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4329057, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4329057
Gene description
uncharacterized LOC4329057
Locus tag
OSNPB_020290400
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1086_G08.4; OJ1756_H07.60
Expression
Ubiquitous expression in flower buds (RPKM 34.3), leaves after flowering (RPKM 27.6) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4329057 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (11019709..11022972)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (10990427..10993770)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene putative pentatricopeptide repeat-containing protein At5g08490 Neighboring gene uncharacterized LOC4329056 Neighboring gene phosphatidylinositol 4-kinase gamma 4-like Neighboring gene uncharacterized LOC4329059

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables rRNA (pseudouridine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables rRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA base methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC4329057
Names
Os02g0290400
putative nucleolar essential protein
ribosomal RNA small subunit methyltransferase nep-1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    11019709..11022972
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767951.3 → XP_015623437.1  uncharacterized protein LOC4329057

    UniProtKB/TrEMBL
    B8AFV1, Q0E1Y4, Q6K882, Q6K889
    Conserved Domains (1) summary
    cd18088
    Location:80 → 278
    Nep1-like; 18S rRNA (pseudouridine(1248)-N1)-methyltransferase Nep1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials