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LOC4328859 phosphoenolpyruvate carboxylase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328859, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4328859
Gene description
phosphoenolpyruvate carboxylase 1
Locus tag
OSNPB_020244700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1134_F06.2-2
Expression
Ubiquitous expression in roots before flowering (RPKM 123.2), flower buds (RPKM 103.0) and 6 other tissues See more
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Genomic context

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See LOC4328859 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (8203181..8209530, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (8177805..8184167, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene ubiquitin C-terminal hydrolase 15-like Neighboring gene polyadenylate-binding protein-interacting protein 8 Neighboring gene probable splicing factor 3A subunit 1 Neighboring gene peroxisome biogenesis protein 7

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphoenolpyruvate carboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbon fixation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in leaf development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tricarboxylic acid cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in chloroplast IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
phosphoenolpyruvate carboxylase 1
Names
Os02g0244700
phosphoenolpyruvate carboxylase-like
putative phosphoenolpyruvate carboxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    8203181..8209530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769162.2 → XP_015624648.1  phosphoenolpyruvate carboxylase 1

    UniProtKB/TrEMBL
    A0A0P0VH10, B8AEX3, Q6EUD7
    Conserved Domains (1) summary
    pfam00311
    Location:167 → 968
    PEPcase; Phosphoenolpyruvate carboxylase

  2. XM_066307725.1 → XP_066163822.1  phosphoenolpyruvate carboxylase 1

    UniProtKB/TrEMBL
    A0A0P0VH10, B8AEX3, Q6EUD7
Nucleotide Protein
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