U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4328823 U2 small nuclear ribonucleoprotein A' [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328823, updated on 17-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4328823
Gene description
U2 small nuclear ribonucleoprotein A'
Locus tag
OSNPB_020234800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1145_E05.10
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4328823 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (7655955..7660301, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (7630851..7635237, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene protein HIGH CHLOROPHYLL FLUORESCENCE PHENOTYPE 173, chloroplastic Neighboring gene transfer RNA glutamine (anticodon CUG) Neighboring gene uncharacterized LOC4328822 Neighboring gene actin-related protein 2/3 complex subunit 3 Neighboring gene uncharacterized LOC9266753

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
U2 small nuclear ribonucleoprotein A'
Names
Os02g0234800
putative U2 snRNP protein A'

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    7655955..7660301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771842.2 → XP_015627328.1  U2 small nuclear ribonucleoprotein A'

    UniProtKB/TrEMBL
    B8AEK8, B9F4G6, Q6EUK2
    Conserved Domains (2) summary
    sd00031
    Location:22 → 39
    LRR_1; leucine-rich repeat [structural motif]
    pfam14580
    Location:1 → 174
    LRR_9; Leucine-rich repeat
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials