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LOC4328647 EIN3-binding F-box protein 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328647, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4328647
Gene description
EIN3-binding F-box protein 1
Locus tag
OSNPB_020200900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4328647 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5638806..5641948, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5628117..5631338, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene glucan endo-1,3-beta-glucosidase 14 Neighboring gene protein WVD2-like 5 Neighboring gene 23.6 kDa heat shock protein, mitochondrial Neighboring gene uncharacterized LOC4328648

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
EIN3-binding F-box protein 1
Names
F-box domain and LRR containing protein
Os02g0200900
P0419A09.13-1
P0419A09.13-2
putative F-box protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    5638806..5641948 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769185.3 → XP_015624671.1  EIN3-binding F-box protein 1

    UniProtKB/TrEMBL
    A0A0N7KEW0, A2X245, A3A490, Q6Z796
    Conserved Domains (3) summary
    cd09293
    Location:468 → 644
    AMN1; Antagonist of mitotic exit network protein 1
    sd00034
    Location:179 → 207
    LRR_AMN1; leucine-rich repeat [structural motif]
    pfam00646
    Location:66 → 107
    F-box; F-box domain
Nucleotide Protein
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