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LOC4328616 copper-transporting ATPase HMA4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328616, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4328616
Gene description
copper-transporting ATPase HMA4-like
Locus tag
OSNPB_020196600
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
HMA4; OsHMA4; OsJ_05752; OJ1225_F07.30; OJ1524_D08.15
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Genomic context

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See LOC4328616 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (5415299..5421202)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (5404709..5410739)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein WIP2 Neighboring gene outer envelope protein 80, chloroplastic-like Neighboring gene exopolygalacturonase Neighboring gene fumarylacetoacetase-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain. Huang XY, et al. Nat Commun, 2016 Jul 8. PMID 27387148, Free PMC Article
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. OsHMA4 functions to sequester Cu into root vacuoles, limiting Cu accumulation in the grain.
    Title: A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATPase-coupled monoatomic cation transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monoatomic cation transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
copper-transporting ATPase HMA4
Names
Copper-transporting ATPase HMA4
LOC_Os02g10290
Protein HEAVY METAL ATPASE 4
heavy metal P1B-type ATPase
probable copper-transporting ATPase HMA5
putative copper-transporting P-type ATPase
NP_001396318.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409389.1 → NP_001396318.1  copper-transporting ATPase HMA4

    Status: VALIDATED

    Source sequence(s)
    AK100988, CB660786
    UniProtKB/Swiss-Prot
    A0A1B1ELV0, Q6H7M3
    UniProtKB/TrEMBL
    A0A1B1ELU7

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    5415299..5421202
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6H7M3.1 GenPept UniProtKB/Swiss-Prot:Q6H7M3

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials