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LOC4328441 glycine cleavage system H protein 2, mitochondrial [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328441, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328441
Gene description
glycine cleavage system H protein 2, mitochondrial
Locus tag
OSNPB_020170100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1116_A06.24
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Genomic context

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See LOC4328441 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3837011..3839194)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3827679..3830123)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phosphatase IMPL1, chloroplastic Neighboring gene pentatricopeptide repeat-containing protein At2g35130 Neighboring gene style cell-cycle inhibitor 1-A Neighboring gene MADS-box transcription factor 29-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in glycine decarboxylation via glycine cleavage system IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein lipoylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of glycine cleavage complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glycine cleavage system H protein 2, mitochondrial
Names
Os02g0170100
P0030G02.14
putative glycine decarboxylase complex H-protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3837011..3839194
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772102.2 → XP_015627588.1  glycine cleavage system H protein 2, mitochondrial

    UniProtKB/TrEMBL
    A2X1E0, A3A3K9, Q0E3J8, Q6H713
    Conserved Domains (1) summary
    PRK01202
    Location:28 → 153
    PRK01202; glycine cleavage system protein GcvH
Nucleotide Protein
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