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LOC4328375 DExH-box ATP-dependent RNA helicase DExH11 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328375, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328375
Gene description
DExH-box ATP-dependent RNA helicase DExH11
Locus tag
OSNPB_020160000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4328375 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (3246042..3258263, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (3237585..3249855, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328373 Neighboring gene protein SCO1 homolog 1, mitochondrial Neighboring gene U2 spliceosomal RNA Neighboring gene protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1 Neighboring gene uncharacterized LOC4328376 Neighboring gene F-box protein At2g39490

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Ski complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DExH-box ATP-dependent RNA helicase DExH11
Names
B1103G11.34
Os02g0160000
putative Helicase SKI2W

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    3246042..3258263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771344.3 → XP_015626830.1  DExH-box ATP-dependent RNA helicase DExH11

    UniProtKB/TrEMBL
    B9F352
    Conserved Domains (5) summary
    smart00490
    Location:736 → 817
    HELICc; helicase superfamily c-terminal domain
    COG4581
    Location:301 → 1372
    Dob10; Superfamily II RNA helicase [Replication, recombination and repair]
    pfam00270
    Location:390 → 538
    DEAD; DEAD/DEAH box helicase
    pfam08148
    Location:1198 → 1366
    DSHCT; DSHCT (NUC185) domain
    pfam13234
    Location:874 → 1171
    rRNA_proc-arch; rRNA-processing arch domain
Nucleotide Protein
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