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LOC4328274 sucrose-phosphatase 2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328274, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4328274
Gene description
sucrose-phosphatase 2-like
Locus tag
OSNPB_020143100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SPP2; OsSPP2; OsJ_005195
Expression
Broad expression in flowers (RPKM 122.9), flower buds (RPKM 102.6) and 6 other tissues See more
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Genomic context

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See LOC4328274 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (2396078..2402032)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (2388405..2394346)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278305 Neighboring gene nuclear pore complex protein NUP160 Neighboring gene protein SEMI-ROLLED LEAF 2-like Neighboring gene auxin-induced protein 15A

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables magnesium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sucrose-phosphate phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sucrose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sucrose-phosphate phosphatase 2
Names
LOC_Os02g05030
OSJNBa0064G16.2
putative sucrose-phosphatase
sucrose-phosphatase 2
NP_001396246.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409317.1 → NP_001396246.1  sucrose-phosphate phosphatase 2

    Status: VALIDATED

    Source sequence(s)
    AK063330
    UniProtKB/Swiss-Prot
    A3A323, B7E8F4, Q6YXW6

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    2396078..2402032
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6YXW6.1 GenPept UniProtKB/Swiss-Prot:Q6YXW6

Gene LinkOut

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