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LOC4328227 rDNA transcriptional regulator pol5 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328227, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328227
Gene description
rDNA transcriptional regulator pol5
Locus tag
OSNPB_020135700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4328227 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1890330..1896518)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1882705..1888952)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene alpha-1,3-arabinosyltransferase XAT2-like Neighboring gene uncharacterized LOC4328226 Neighboring gene protein transport protein SEC13 homolog B Neighboring gene protein PTST, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rDNA transcriptional regulator pol5
Names
OSJNBa0081C13.5
Os02g0135700
P0585B01.32
myb-binding protein 1A-like protein
putative DNA polymerase V

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    1890330..1896518
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771287.3 → XP_015626773.1  rDNA transcriptional regulator pol5

    UniProtKB/TrEMBL
    B8AHC9, B9F2L5, Q6Z0Z0, Q6Z823
    Conserved Domains (1) summary
    pfam04931
    Location:176 → 1044
    DNA_pol_phi; DNA polymerase phi
Nucleotide Protein
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