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LOC4328161 uncharacterized LOC4328161 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328161, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328161
Gene description
uncharacterized LOC4328161
Locus tag
OSNPB_020127000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4328161 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1419161..1422943)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1412111..1415979)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene Golgi SNAP receptor complex member 1-2 Neighboring gene phosphatidate cytidylyltransferase 4, chloroplastic Neighboring gene glycine-rich protein 5 Neighboring gene uncharacterized LOC4328165

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein folding in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of EMC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4328161
Names
ER membrane protein complex subunit 2
Os02g0127000
P0482F12.21-1
putative TPR repeat containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    1419161..1422943
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767368.3 → XP_015622854.1  uncharacterized protein LOC4328161

    UniProtKB/TrEMBL
    A0A0P0VEC6, B9F287
    Conserved Domains (3) summary
    TIGR02917
    Location:81 → 196
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00006
    Location:112 → 136
    TPR; TPR repeat [structural motif]
    pfam14559
    Location:154 → 217
    TPR_19; Tetratricopeptide repeat
Nucleotide Protein
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