U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4328111 uncharacterized LOC4328111 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328111, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4328111
Gene description
uncharacterized LOC4328111
Locus tag
OSNPB_020120300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1020_C02.4
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4328111 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1073927..1075908)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1067005..1069118)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene serine/threonine-protein kinase STY46 Neighboring gene phospholipase D delta Neighboring gene uncharacterized LOC4328112 Neighboring gene transcription factor TDR-like Neighboring gene ubiquitin-conjugating enzyme E2 28

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
uncharacterized protein LOC4328111
Names
OSJNBb0088N06.13
Os02g0120300
methyltransferase-like protein 23

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    1073927..1075908
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_026023144.2 → XP_025878929.1  uncharacterized protein LOC4328111 isoform X1

    Conserved Domains (1) summary
    cl17173
    Location:43 → 196
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_015770242.3 → XP_015625728.1  uncharacterized protein LOC4328111 isoform X2

    UniProtKB/TrEMBL
    B9F257, Q6YUS4
    Conserved Domains (1) summary
    cl17173
    Location:43 → 193
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials