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LOC4328107 choline/ethanolaminephosphotransferase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328107, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4328107
Gene description
choline/ethanolaminephosphotransferase 1
Locus tag
OSNPB_020119800
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1217_F02.24
Expression
Ubiquitous expression in roots before flowering (RPKM 39.2), roots after flowering (RPKM 37.7) and 5 other tissues See more
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Genomic context

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See LOC4328107 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (1047416..1052579)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (1040497..1045766)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4328105 Neighboring gene uncharacterized LOC136355182 Neighboring gene pentatricopeptide repeat-containing protein At2g17670 Neighboring gene pentatricopeptide repeat-containing protein At2g17033 Neighboring gene GDSL esterase/lipase At5g55050 Neighboring gene serine/threonine-protein kinase STY46

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphotransferase activity, for other substituted phosphate groups IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
choline/ethanolaminephosphotransferase 1
Names
OSJNBb0088N06.8
Os02g0119800
putative aminoalcoholphosphotransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    1047416..1052579
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015769734.3 → XP_015625220.1  choline/ethanolaminephosphotransferase 1

    UniProtKB/TrEMBL
    A0A0P0VE21, A0A0P0VE27, A0A8J8Y9N5, B9F252, Q0E4H0
    Conserved Domains (1) summary
    PLN02359
    Location:1 → 389
    PLN02359; ethanolaminephosphotransferase
Nucleotide Protein
Heading Accession and Version

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