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LOC4328083 DNA-directed RNA polymerase II subunit 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328083, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4328083
Gene description
DNA-directed RNA polymerase II subunit 4
Locus tag
OSNPB_020116900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1442_E05.22
Expression
Ubiquitous expression in flower buds (RPKM 67.7), leaves after flowering (RPKM 66.2) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 2
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (901461..902344, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (894681..895728, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene phytosulfokine receptor 1 Neighboring gene uncharacterized LOC4328082 Neighboring gene protein LPA3 Neighboring gene transfer RNA alanine (anticodon CGC)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables translation initiation factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in transcription initiation at RNA polymerase II promoter IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RNA polymerase II, core complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA-directed RNA polymerase II subunit 4
Names
Os02g0116900
putative 15.9 kDa subunit of RNA polymerase II

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    901461..902344 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771656.2 → XP_015627142.1  DNA-directed RNA polymerase II subunit 4

    UniProtKB/TrEMBL
    A0A0P0VDW0, A2X046, A3A2G2, Q6ZGM1
    Conserved Domains (1) summary
    smart00657
    Location:16 → 142
    RPOL4c; DNA-directed RNA-polymerase II subunit
Nucleotide Protein
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