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LOC4328016 40S ribosomal protein S4-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4328016, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4328016
Gene description
40S ribosomal protein S4-like
Locus tag
OSNPB_020105900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
RPS4; SS620; OJ1359_D06.12
Expression
Ubiquitous expression in flower buds (RPKM 376.2), flowers (RPKM 244.7) and 6 other tissues See more
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Genomic context

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See LOC4328016 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (323076..325643, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (316699..319148, complement)

Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene BAG family molecular chaperone regulator 7 Neighboring gene uncharacterized LOC4328015 Neighboring gene uncharacterized LOC136355075 Neighboring gene sucrose:sucrose 1-fructosyltransferase Neighboring gene putative pentatricopeptide repeat-containing protein At1g68930

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
small ribosomal subunit protein eS4
Names
40S ribosomal protein S4
LOC_Os02g01560
SCAR protein SS620
putative ribosomal protein S4
ribosomal protein small subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406417.1 → NP_001393346.1  small ribosomal subunit protein eS4

    Status: VALIDATED

    Source sequence(s)
    CB000020, CI019704, CI303240
    UniProtKB/Swiss-Prot
    O24235, P49398, Q6ETD5
    UniProtKB/TrEMBL
    A2WZV1, A3A284, Q0E4Q0

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

    Range
    323076..325643 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P49398.3 GenPept UniProtKB/Swiss-Prot:P49398

Gene LinkOut

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Molecular Biology Databases
Research Materials