U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4327748 mannosyl-oligosaccharide glucosidase GCS1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327748, updated on 12-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4327748
Gene description
mannosyl-oligosaccharide glucosidase GCS1
Locus tag
OSNPB_010921200
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1485_B09.4
Expression
Ubiquitous expression in leaves after flowering (RPKM 18.1), roots after flowering (RPKM 16.7) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4327748 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (40855549..40863872)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (40220901..40229220)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein At4g15970 Neighboring gene uncharacterized protein At4g15970 Neighboring gene probable arabinosyltransferase ARAD1 Neighboring gene exocyst complex component EXO70B1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. OsMOGS is required for N-glycan formation and auxin-mediated root development in rice (Oryza sativa L.). Wang S, et al. Plant J, 2014 May. PMID 24597623, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables Glc3Man9GlcNAc2 oligosaccharide glucosidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in oligosaccharide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein N-linked glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
alpha-glucosidase 2; mannosyl-oligosaccharide glucosidase GCS1
Names
Os01g0921200
putative alpha-glucosidase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    40855549..40863872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765388.2 → XP_015620874.1  alpha-glucosidase 2 isoform X1

    UniProtKB/TrEMBL
    A0A0P0VC79, A2WYG5
    Conserved Domains (2) summary
    pfam03200
    Location:367 → 865
    Glyco_hydro_63; Glycosyl hydrolase family 63 C-terminal domain
    pfam16923
    Location:126 → 281
    Glyco_hydro_63N; Glycosyl hydrolase family 63 N-terminal domain

  2. XM_015765389.3 → XP_015620875.1  mannosyl-oligosaccharide glucosidase GCS1 isoform X2

    UniProtKB/TrEMBL
    A2WYG5
    Conserved Domains (2) summary
    pfam03200
    Location:196 → 694
    Glyco_hydro_63; Glycosyl hydrolase family 63 C-terminal domain
    pfam16923
    Location:10 → 110
    Glyco_hydro_63N; Glycosyl hydrolase family 63 N-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials