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LOC4327709 protein TPR1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327709, updated on 10-Oct-2024

Summary

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Gene symbol
LOC4327709
Gene description
protein TPR1-like
Locus tag
OSNPB_010254100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
TPR1; TPR2; ASPR2; OsTPR2; OsASPR2; OsJ_01134
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Genomic context

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See LOC4327709 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (8432786..8442143, complement)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (8421056..8430280, complement)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene phospholipase A1 PLIP3, chloroplastic Neighboring gene GTP-binding protein SAR1A Neighboring gene peptidyl-prolyl cis-trans isomerase CYP21-3, mitochondrial Neighboring gene putative pectinesterase/pectinesterase inhibitor 22

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Aberrant spikelet and panicle1, encoding a TOPLESS-related transcriptional co-repressor, is involved in the regulation of meristem fate in rice. Yoshida A, et al. Plant J, 2012 Apr. PMID 22136599
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein TPR1
Names
ASP1-RELATED2
LOC_Os01g15020
OSNPB_010254100
P0705D01.10-1
Protein ASP1-RELATED 2
Protein TPR1
aberrant spikelet and panicle1-related 2
putative CTV.2
topless-related protein 1
topless-related protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001406414.1 → NP_001393343.1  protein TPR1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AB638271, AP014957, CI341352, CI522620, CI593329
    UniProtKB/Swiss-Prot
    A0A0P0V0G9, Q5NBT9

  2. NM_001406415.1 → NP_001393344.1  protein TPR1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK111583, AP014957, CI341352, CI522620, CI593329
    Conserved Domains (5) summary
    smart00667
    Location:4 → 34
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:34 → 92
    CTLH; C-terminal to LisH motif
    PRK14951
    Location:203 → 310
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
    sd00039
    Location:331 → 387
    7WD40; WD40 repeat [structural motif]
    cl29593
    Location:329 → 640
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    8432786..8442143 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015762340.3 → XP_015617826.1  protein TPR1 isoform X1

    UniProtKB/TrEMBL
    A2WMZ2
    Conserved Domains (5) summary
    smart00667
    Location:4 → 34
    LisH; Lissencephaly type-1-like homology motif
    smart00668
    Location:34 → 92
    CTLH; C-terminal to LisH motif
    COG2319
    Location:306 → 607
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:326 → 382
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:324 → 635
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5NBT9.1 GenPept UniProtKB/Swiss-Prot:Q5NBT9

Gene LinkOut

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Molecular Biology Databases
Research Materials