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LOC4327558 dihydropyrimidinase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327558, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4327558
Gene description
dihydropyrimidinase
Locus tag
OSNPB_010807900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots before flowering (RPKM 19.9), roots after flowering (RPKM 17.1) and 5 other tissues See more
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Genomic context

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See LOC4327558 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
16
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (34902498..34913344)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (34295656..34305938)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136355498 Neighboring gene uncharacterized LOC136355499 Neighboring gene putative disease resistance protein RGA4 Neighboring gene transcription factor TGAL1-like Neighboring gene calcium-dependent protein kinase 2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dihydropyrimidinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in pyrimidine nucleobase catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
dihydropyrimidinase
Names
Os01g0807900
P0702B09.41-1
P0702B09.41-2
putative dihydropyrimidine amidohydrolase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    34902498..34913344
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015795654.3 → XP_015651140.1  dihydropyrimidinase

    UniProtKB/TrEMBL
    A0A0P0V9G6, A2WW59, Q0JIE1, Q94J90
    Conserved Domains (1) summary
    PLN02942
    Location:54 → 535
    PLN02942; dihydropyrimidinase
Nucleotide Protein
Heading Accession and Version

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