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LOC4327522 laccase-3-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327522, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4327522
Gene description
laccase-3-like
Locus tag
OSNPB_010827300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
LAC3; OsJ_03932; B1088C09.5
Expression
Biased expression in roots before flowering (RPKM 27.5) and flower buds (RPKM 1.4) See more
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Genomic context

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See LOC4327522 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36027681..36030184)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35402777..35405310)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4327519 Neighboring gene uncharacterized LOC4327520 Neighboring gene PRA1 family protein B2-like Neighboring gene exocyst complex component EXO70B1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables copper ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydroquinone:oxygen oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lignin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in apoplast IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
laccase-3
Names
Benzenediol:oxygen oxidoreductase 3
Diphenol oxidase 3
LOC_Os01g61160
Urishiol oxidase 3
putative laccase
NP_001396054.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001409125.1 → NP_001396054.1  laccase-3 precursor

    Status: VALIDATED

    Source sequence(s)
    AK071929, CI189139, CI224975, CI661719
    UniProtKB/Swiss-Prot
    B7EK61, Q941X2
    UniProtKB/TrEMBL
    B8ABM4

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    36027681..36030184
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q941X2.1 GenPept UniProtKB/Swiss-Prot:Q941X2

Gene LinkOut

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Research Materials