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LOC4327388 heat shock 70 kDa protein 4 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327388, updated on 17-Jul-2024

Summary

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Gene symbol
LOC4327388
Gene description
heat shock 70 kDa protein 4
Locus tag
OSNPB_010840100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Genomic context

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See LOC4327388 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36664798..36668246)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36039687..36043154)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 7 Neighboring gene osmotin-like protein Neighboring gene uncharacterized LOC4327389 Neighboring gene WUSCHEL-related homeobox 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent protein folding chaperone IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heat shock 70 kDa protein 4
Names
70 kDa heat shock protein
70kDa heat shock protein
Os01g0840100
P0031D11.41
P0408C03.16
probable mediator of RNA polymerase II transcription subunit 37c
putative HSP70

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    36664798..36668246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015763480.3 → XP_015618966.1  heat shock 70 kDa protein 4

    UniProtKB/TrEMBL
    A0A0P0VAE2, A2ZZF3, Q40693, Q943K7
    Conserved Domains (1) summary
    PTZ00009
    Location:4 → 648
    PTZ00009; heat shock 70 kDa protein; Provisional
Nucleotide Protein
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