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LOC4327382 uncharacterized LOC4327382 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327382, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4327382
Gene description
uncharacterized LOC4327382
Locus tag
OSNPB_010839300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0408C03.5
Expression
Ubiquitous expression in flower buds (RPKM 25.1), leaves after flowering (RPKM 17.0) and 6 other tissues See more
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Genomic context

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See LOC4327382 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (36632494..36634985)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36007355..36009951)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein ZAT8 Neighboring gene protein SOSEKI 5 Neighboring gene pentatricopeptide repeat-containing protein At5g42450, mitochondrial Neighboring gene histone H2B.11-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4327382
Names
50S ribosomal protein L17
Os01g0839300
P0031D11.30
putative 50S ribosomal protein L17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    36632494..36634985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309944.1 → XP_066166041.1  uncharacterized protein LOC4327382 isoform X1

  2. XM_015772428.3 → XP_015627914.1  uncharacterized protein LOC4327382 isoform X2

    UniProtKB/TrEMBL
    A0A8J8XHB8, A2WWU0, A2ZZE8, Q0JHW2, Q5N9V4
    Conserved Domains (1) summary
    PRK05591
    Location:3 → 113
    rplQ; 50S ribosomal protein L17; Validated
Nucleotide Protein
Heading Accession and Version

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